PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG022000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 889aa    MW: 96491.5 Da    PI: 6.8093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG022000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696947311355
                          HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Pavir.3NG022000.1.p 694 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 731
                          67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-286154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804681730IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4694739IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGFC GHASCSAGSE APDAGCEPGS  60
SVCTLVRKIM ASQIHVVGEG TIGRAAFTGN HQWIIHDPAN DHSLRSEVSA EINHQFVAGI  120
RTIAIIPVLP RGVLQLGSTN VVVEDTNLVL QYKKLCSQLN NRSSMASSSS VKKESNQKVQ  180
SRPLNAPPSI YSADARSNIF GGSPVTYQQC YGLDATTVSS STLANTGSNA SLLMVAQRNG  240
QSVKEHIIYA PDMRFRPQNP YCDRRVESNS QSSVVSSDFI SSISTSMEKH PLLMTSSRQL  300
EQGNMGEQSD PRNFLLKSLA YRNPLVHENT NMTLLHGRSQ VSDFVNSHGG FDFLPEGTRV  360
VKGNLYASTA NQNLEQRCNS TSGSAGHKSA ISYKIPQSAQ VVMKMESHKG ETFQASAAVS  420
SGSNLSSSLK TAISQEKHIS SSDLGGPKKA NEVHDPADAI VQAVKNMDRR KLPDISNEKV  480
PSLLMDPIAE SDLFDMFGSE FHHLYHNVDN DLTGKAAKPE SSNRGAPESS VHVDTSPAFD  540
SVDGEFPYSG IFSLTDTDQL LDAVISNVNP GGKQISGDSA SCKTSVTDIP SSSYCRSKDP  600
KHCESSGAPS LIKNELTVSN LVKQPSFLEN EEDGCLSQNN GMHKSQIRLW IESGQNMKCE  660
SASASNSKGV DTSSKASRKR SRPGENPKPR PKDRQLIQDR IKELRELVPN GAKCSIDALL  720
EKTIKHMLFL QSVTKHADNL KDSNESKILG GENGPLKDYF EGGATWAFDV GSQSMTCPII  780
VEDLERPRQM LVEMLCEDRG IFLEIADFIK GLGLTILRGV MEARKNKIWA RFTVEANRDV  840
TRMEIFLSLM RLLEPSCDGG GAGENPNNAK MPLGVVQYPV IPATGHLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.344210.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG022000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A2T7E5C60.0A0A2T7E5C6_9POAL; Uncharacterized protein
STRINGPavir.Cb02031.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-51conserved peptide upstream open reading frame 7