PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG022100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 817aa    MW: 93882.1 Da    PI: 5.674
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG022100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-2496182290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  Pavir.3NG022100.1.p  96 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 182
                          7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2296182IPR004330FAR1 DNA binding domain
PfamPF105515.3E-29294388IPR018289MULE transposase domain
PROSITE profilePS509669.483576612IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-4580605IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-5587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MEGTSIAIEI DGEAICLDSV GDDEQEAQEN GEMEQIIYSA ENGEQVAFDN QEQGREEEPT  60
GNEEDREHSS IIPSREELTE ELRNKVAYSE EEAYRLYCDY GHRMGFSVRK GKQYYFTGTK  120
TIRTKDYYCS KEGLKDDEQL TEANFNKPET RTNCKAMVRF RVDSEGQWRV IQIIPEHNHE  180
LVRPEEIHLL RSVRTLSVPK SGVLSAMVNA EIQAMHDSLH INEDGAECHS QLSIRSYTLL  240
EPEDCEALVG YFKRRANEQG MFYWDVQVDQ EGRMANFFWR DGRSRVDYDS FGDVVMFDTS  300
HRTNKYNMIC APFVGVNHHR QNVMFGCAFL LDESPASYEW LFKSFLEAMG GRPPKTIFTD  360
QNESISKAIE DVLPGTRHCL CQRFIEKNLQ SHLGTINDSG TFHSMLSKCM RECESEAEFD  420
EAWAMMHHEY NMQKHQWLSD LYQQRHKWCT ALHKDAFDGG IESLDRNEGS NNVLSSIDDE  480
STSLATFVHK LDKTVGIWRK NESLEDIQCN QAAPECIVKH SRILQHAAEV YTHKVYKSLE  540
KDFLDGCGAT SYQEVQCDET LYRFEFILQR SGPKVWVVFL NTSTLDLSCS CKKFETMGVL  600
CSHALNALGL KNVDRIPEKY ILKRWTKYVR KETYPFPVDG FAEQDRSYAL MYRNRAMRFV  660
YDLLMKSKSH QNTRKLILDV LESGEKSLES VCELKRLHMH PLGKEKDGSR VEKRKKKSTK  720
QEKHSRNVKQ VVLPQPAGSV FVDPPNQDQY YAAEDIASNS SIGRTFYYQA YPTTGVSTSQ  780
IQGHTNMQSV PQCASQDYST YAAVQPSSQF GGERNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227000.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG022100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808353.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7E5E60.0A0A2T7E5E6_9POAL; Uncharacterized protein
STRINGPavir.Cb02030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-85FAR1-related sequence 5