PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG023500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 363aa    MW: 37602.3 Da    PI: 6.5195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG023500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19178227255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Pavir.3NG023500.1.p 178 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDGAALRFRG 227
                          8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-22177237No hitNo description
PfamPF008475.5E-13178227IPR001471AP2/ERF domain
SMARTSM003801.5E-36178241IPR001471AP2/ERF domain
PROSITE profilePS5103225.633178235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32178237IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22178237IPR016177DNA-binding domain
PRINTSPR003678.9E-12179190IPR001471AP2/ERF domain
PRINTSPR003678.9E-12201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCHAAVADSG EQHGRRLLAA GDGGGGDRRQ QQQQPQPLEP VVMEANTAAS PALSRGRQAR  60
EMSAMVAALA RVVAGSAPPA KAPPQAVQDA SAEEAWWPYD ELAAEPSPAF VLDGYSETQP  120
LPEHYWPSAA AATEAATSSQ THYRAASAAA AEEEVPSPSS ASAAAGASSS GSAATRKRYR  180
GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AEAAARAYDG AALRFRGSRA RLNFPESATL  240
PSPPPPDPAS RALPPPPPRP DALLESQAQA PSTGGGMEQY AEYARLLQSA GGDPGGSSGT  300
PSGTLPPPPP PAAYSFAAQG VTPFSYLSPP QSRGEPAGNP AAAWAASHYH GSYPPWRWDH  360
SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22177235463ATERF1
3gcc_A1e-22177235463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG023500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126203e-62CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808413.11e-165ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7E5K00.0A0A2T7E5K0_9POAL; Uncharacterized protein
STRINGPavir.J04335.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-23related to AP2 6