PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG028300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 421aa    MW: 44243.2 Da    PI: 9.2403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG028300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19219268255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Pavir.3NG028300.1.p 219 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDGAALRFRG 268
                          8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-21218278No hitNo description
SuperFamilySSF541713.6E-22219278IPR016177DNA-binding domain
SMARTSM003802.5E-36219282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32219278IPR001471AP2/ERF domain
PROSITE profilePS5103225.659219276IPR001471AP2/ERF domain
PfamPF008476.8E-13219268IPR001471AP2/ERF domain
PRINTSPR003671.1E-11220231IPR001471AP2/ERF domain
PRINTSPR003671.1E-11242258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNHIRALYKW THVARQGDPE PFLRTKARAC HVVAGAAAGQ CLLDRSFMCH AAVAESGEQH  60
GRRRLAAGDV GGGRGGDRQQ PLQPLEPVVM EANTAASPAL SRARQAQEMS AMVAALARVV  120
AGSAPPAKAV QEASAEEAWW PYDELAAEPS PSFVLDGYRE TQPPPEHYWP SAAAATEAVT  180
SSQTQYRAAS GAAAEEELPS PSSAGAGASG SGSAAPRKRY RGVRQRPWGK WAAEIRDPHK  240
AARVWLGTFD TAEAAARAYD GAALRFRGSR AKLNFPESAT LPSPPPPDPA PRALPPPPRP  300
DALLESQAPP TGGVMEQYAE YARLLQSAGG DPGGSSGAPS GTLPPPPPPA TSTYSFAAEG  360
ATPFSYLSPP QSRMEALRDM EEGHGPSRRA AMAQREVRGQ AWRQGYGRHG PGQHGGRRGG  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22218276463ATERF1
3gcc_A2e-22218276463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.189158e-54stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG028300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126204e-74CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808413.11e-138ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7E5K01e-160A0A2T7E5K0_9POAL; Uncharacterized protein
STRINGPavir.Cb02005.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-24ethylene response factor 110