PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG029100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 477aa    MW: 51252.2 Da    PI: 9.6241
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG029100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.3e-15151182132
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                          C +Cg+++Tp+WR+gp g+ tLCnaCG++ + 
  Pavir.3NG029100.1.p 151 CLQCGAIETPQWRSGPMGSGTLCNACGVRLKA 182
                          89**************************9986 PP
2GATA51.31.5e-16284318135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Pavir.3NG029100.1.p 284 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 318
                          99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-12145195IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.442145199IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13145191No hitNo description
Gene3DG3DSA:3.30.50.105.1E-14149188IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.00E-11150193No hitNo description
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
PfamPF003204.4E-13151182IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-15278332IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651278314IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-13279336No hitNo description
Gene3DG3DSA:3.30.50.109.7E-14282316IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.68E-13283339No hitNo description
PfamPF003202.4E-14284318IPR000679Zinc finger, GATA-type
PROSITE patternPS003440284309IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MATVEGYKTE PPGLGPRTGR SAATMATDDL AGGGREGERE GALGYILSLP AAALPLPVAV  60
SCLDATVPRK ARSRPRLHAQ PCSWWTFELP VPAPEEAKTP APTAPAATNP TEEARPPRPQ  120
RSRPPVCQAP PHDPHTPAPA MERPAKRARR CLQCGAIETP QWRSGPMGSG TLCNACGVRL  180
KAAGALREQV HRPPPATART VAEPPPESPV ADSSPDGPIW EPGSVPDVYL LRKKPPKRGR  240
SPPPRTEPAS PPAPAVFLVK KKKKKAPKTP NKKPWRPRKS AKRCLHCGSS STPQWREGPM  300
GRSTLCNACG VRYRQGRLLP EYRPLVSPTF EPSEHANRHS QVLQLHRQRK GHQKNQQPLP  360
TEEPRPVDHP TGAPPCSGGG DDPMNVLLPR RWHNKNEYPP TPLHQPLPQP ADSLAGDQHV  420
GDVDEPAPGR GGSNNDPNDA PSSLDPLLLE GRSLDPLLLE GPSAPLIVDG DDPFVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260272KKKKKAPKTPNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG029100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
TrEMBLA0A2S3H6860.0A0A2S3H686_9POAL; Uncharacterized protein
TrEMBLA0A368S0V10.0A0A368S0V1_SETIT; Uncharacterized protein
STRINGPavir.J26059.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-26GATA transcription factor 12