PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG029100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 453aa    MW: 48822.4 Da    PI: 9.5253
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG029100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.2e-15127158132
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                          C +Cg+++Tp+WR+gp g+ tLCnaCG++ + 
  Pavir.3NG029100.2.p 127 CLQCGAIETPQWRSGPMGSGTLCNACGVRLKA 158
                          89**************************9986 PP
2GATA51.41.4e-16260294135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Pavir.3NG029100.2.p 260 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 294
                          99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-12121171IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.442121175IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13121167No hitNo description
Gene3DG3DSA:3.30.50.104.8E-14125164IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.78E-11126169No hitNo description
PfamPF003204.1E-13127158IPR000679Zinc finger, GATA-type
PROSITE patternPS003440127152IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-15254308IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651254290IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-13255312No hitNo description
Gene3DG3DSA:3.30.50.109.0E-14258292IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.46E-13259315No hitNo description
PfamPF003202.3E-14260294IPR000679Zinc finger, GATA-type
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MATDDLAGGG REGEREGALG YILSLPAAAL PLPVAVSCLD ATVPRKARSR PRLHAQPCSW  60
WTFELPVPAP EEAKTPAPTA PAATNPTEEA RPPRPQRSRP PVCQAPPHDP HTPAPAMERP  120
AKRARRCLQC GAIETPQWRS GPMGSGTLCN ACGVRLKAAG ALREQVHRPP PATARTVAEP  180
PPESPVADSS PDGPIWEPGS VPDVYLLRKK PPKRGRSPPP RTEPASPPAP AVFLVKKKKK  240
KAPKTPNKKP WRPRKSAKRC LHCGSSSTPQ WREGPMGRST LCNACGVRYR QGRLLPEYRP  300
LVSPTFEPSE HANRHSQVLQ LHRQRKGHQK NQQPLPTEEP RPVDHPTGAP PCSGGGDDPM  360
NVLLPRRWHN KNEYPPTPLH QPLPQPADSL AGDQHVGDVD EPAPGRGGSN NDPNDAPSSL  420
DPLLLEGRSL DPLLLEGPSA PLIVDGDDPF VD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236248KKKKKAPKTPNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG029100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
RefseqXP_004977278.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X2
TrEMBLA0A368S0V10.0A0A368S0V1_SETIT; Uncharacterized protein
TrEMBLK3Y7D90.0K3Y7D9_SETIT; Uncharacterized protein
STRINGPavir.J26059.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-26GATA transcription factor 12