PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG034600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 637aa MW: 71190 Da PI: 7.4413

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG034600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.9	7.4e-27	475	525	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Pavir.3NG034600.1.p 475 EKTFSLEVIQNYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 525 8999********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	464	545	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-23	478	525	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MVDDYSDSSD FLKERLTLAL RYFKESTNQH LLVQVWVPIG QGDRYMLSTS GQPFVLDQRS 60 IGLLQYRAVS MMYMFSVDGD NVKELGLPGR VYKQKVPEWT PNVQYYSSTE YARLNHAISY 120 NVHGTVALPV FDPYTKSCIA VVELIMTSKK VNYASKVGKV SKALEAVNLK STEVVEHPYV 180 QTQIFSEGHQ AALVEMLEVL TVICEELKLL LAQTWVPCKY QNLLVPCGGV KKSNFNIHGS 240 CAQELCMSTS DVAFHVIDAH MWGFRDACVE HHLQKGQGVS GKACILHRPC FSKDVTRFSK 300 MEYPLVHYAR MFGLAGCFSV CLQSAYTGND DYVLEFFLPP DCREDDEQKV LLESLLALLR 360 QHLHSLHPTT DEGSNEELQF DAITVMDSNE TKDEHAQHLN FEGGIHAHES NTHGVHESDS 420 QKRIASSEYE MCLSPENSTK CNGKLFVGPN GGCTSDSLLP DNNSKHHGRR RGKAEKTFSL 480 EVIQNYFTGS LKNAAKSLGV CPTTMKRICR QHGISRWPSR QISKVNRSIS KLKKVIESVE 540 GSESAFTLTS ITGPLPIPFS QSNPINIKNG RKTEVSDLSI SSVQENRGSS SKIKLLENDR 600 LGMLIPQRSF LPNISRQIER EKALFLRSSS GEPSTN*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MVDDYSDSSD FLKERLTLAL RYFKESTNQH LLVQVWVPIG QGDRYMLSTS GQPFVLDQRS  60
IGLLQYRAVS MMYMFSVDGD NVKELGLPGR VYKQKVPEWT PNVQYYSSTE YARLNHAISY  120
NVHGTVALPV FDPYTKSCIA VVELIMTSKK VNYASKVGKV SKALEAVNLK STEVVEHPYV  180
QTQIFSEGHQ AALVEMLEVL TVICEELKLL LAQTWVPCKY QNLLVPCGGV KKSNFNIHGS  240
CAQELCMSTS DVAFHVIDAH MWGFRDACVE HHLQKGQGVS GKACILHRPC FSKDVTRFSK  300
MEYPLVHYAR MFGLAGCFSV CLQSAYTGND DYVLEFFLPP DCREDDEQKV LLESLLALLR  360
QHLHSLHPTT DEGSNEELQF DAITVMDSNE TKDEHAQHLN FEGGIHAHES NTHGVHESDS  420
QKRIASSEYE MCLSPENSTK CNGKLFVGPN GGCTSDSLLP DNNSKHHGRR RGKAEKTFSL  480
EVIQNYFTGS LKNAAKSLGV CPTTMKRICR QHGISRWPSR QISKVNRSIS KLKKVIESVE  540
GSESAFTLTS ITGPLPIPFS QSNPINIKNG RKTEVSDLSI SSVQENRGSS SKIKLLENDR  600
LGMLIPQRSF LPNISRQIER EKALFLRSSS GEPSTN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG034600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805501.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2S3H6R6	0.0	A0A2S3H6R6_9POAL; Uncharacterized protein
STRING	Pavir.J38126.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG034600.1.p