PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG036100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 176aa    MW: 19417.9 Da    PI: 5.2534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG036100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-053863123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                         y Cp   C+k + +++ L+ H++t H
  Pavir.3NG036100.1.p 38 YICPyeGCDKAYIHSYKLNLHLKTqH 63
                         89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.92E-73163No hitNo description
Gene3DG3DSA:3.30.160.601.0E-93563IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.7463871IPR007087Zinc finger, C2H2
SMARTSM003550.00453863IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804063IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVQTGTPVAV QHTPPVEKPH SAPKPSTPAT TSFPDRPYIC PYEGCDKAYI HSYKLNLHLK  60
TQHPEHGQEE NGKLGASGQH GVNETMYQYN YAEVGDTAPN PKRSKTHKVH SSKVYNTKIS  120
TAMPSNISGV KHQWSGKATY EDDSEETEED GGNNNEDGWT RYGNNADDEE TQDED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG036100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809834.11e-104zinc finger transcription factor YY1-like
TrEMBLA0A2S3H7B21e-103A0A2S3H7B2_9POAL; Uncharacterized protein
STRINGPavir.Cb01849.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-18C2H2 family protein