PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG044100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19229.3 Da    PI: 12.0136
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG044100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.2e-1872110947
                          HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF   9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 
                          r+++   Rrng+lKKA+ELSvLCdae a+iifss++kl+
  Pavir.3NG044100.1.p  72 RTTSSRSRRNGLLKKAYELSVLCDAEFALIIFSSHDKLR 110
                          7888889****************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-1049115IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-1471115IPR002100Transcription factor, MADS-box
PfamPF003193.7E-1472109IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.97972109IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-127893IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-1293114IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MATQLELLAG CSFRINSRLG WWWRGTRALV TALISPAGAA IHSHRSRARG RGRRKVTRIS  60
ARPLAPHLQP ARTTSSRSRR NGLLKKAYEL SVLCDAEFAL IIFSSHDKLR VREHRRVVES  120
STPVLLYISA LRRHCSSGTR WRRQTEQCFQ NYGCRGCYKV IWEPKVST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG044100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353732e-39BT035373.1 Zea mays full-length cDNA clone ZM_BFb0058A05 mRNA, complete cds.
GenBankKJ7275632e-39KJ727563.1 Zea mays clone pUT5423 MADS transcription factor (MADS12) mRNA, partial cds.
GenBankMZEMADSA2e-39L46397.1 Zea mays MADS-box protein (ZAG3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Cb01739.1.p1e-119(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-12AGAMOUS-like 6