PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG045500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 225aa    MW: 23344.6 Da    PI: 6.6286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG045500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000265880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C  C++ F++   L  H++ H
  Pavir.3NG045500.1.p 58 YECVFCKRGFTTAQALGGHMNIH 80
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.61E-65684No hitNo description
PROSITE profilePS5015710.995885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDSGSKMESS KAASSGDGAM TTSPEPESAA AAAGGGGEEE AAVSPPAPAA AASPRPYYEC  60
VFCKRGFTTA QALGGHMNIH RRDRAKPPAR DSPTGITSVS HNVECYNKYR HLVSPPPYPP  120
AQSTPIPVGA GSSFAMYYVS SGTAAAGARL DAEGGSPSSV SPRELSLFGE ANRDQDLHLG  180
LGHQGHIGGG SRTPDEGGPE RQQYSGEPER ELDLELRLGR RPRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG045500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454772e-40AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149612e-40AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805746.11e-103uncharacterized protein LOC112884551
TrEMBLA0A3L6R6D71e-104A0A3L6R6D7_PANMI; Transcriptional regulator SUPERMAN-like
STRINGPavir.Cb01744.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-14C2H2 family protein