PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG047600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 441aa MW: 47735.2 Da PI: 10.2691

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG047600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.7e-10	323	387	19	83
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 pk++ + h++++e + +l d++g s++++l+y ++ ++y l +GW F +ng++ gD+v Pavir.3NG047600.1.p 323 PKECRSVHKLDNEDGLELGAIDRHGYSYSMRLKYINSARQYRLMQGWAPFLTQNGVRKGDMVEVG 387 5666555699999999********************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.3E-9	286	386	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.61E-9	287	386	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.88E-7	287	384	No hit	No description
PROSITE profile	PS50863	9.234	344	405	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MTASSLGAAA SNGGGNVAGS RFRLLASFKK WKNRHLTGNC AAGAVDAKPG HEPDAVVLAA 60 VEPSLPLNEK RGHDFNREKI WASKKLRSSN AAARQSGNAI ANATAAATSS PIVRELAGNR 120 DSGNAIYKKG HHLPWGSIGV AMDEKTEEKL RPSMFAASVH GLGGLHQDWK VTALDIALSS 180 QRVQKPVECD HHHNGEDACL LIKRSCLAGM VVCEGSNGGV DQNRAIPSAP STGTQEPTRR 240 SSPTREAKGA RWRGRKKALH SSRKTPTRSF MSLSSGLQCL GVTDVTPVLA KTLTATDSRL 300 DQSRLQFAPR EVMESPLMSI LTPKECRSVH KLDNEDGLEL GAIDRHGYSY SMRLKYINSA 360 RQYRLMQGWA PFLTQNGVRK GDMVEVGGFR VEGKPMLTLL NYAAEGWIPE ETEAAHGLLM 420 LLNFNDEQGR KNRVQKSLSK *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MTASSLGAAA SNGGGNVAGS RFRLLASFKK WKNRHLTGNC AAGAVDAKPG HEPDAVVLAA  60
VEPSLPLNEK RGHDFNREKI WASKKLRSSN AAARQSGNAI ANATAAATSS PIVRELAGNR  120
DSGNAIYKKG HHLPWGSIGV AMDEKTEEKL RPSMFAASVH GLGGLHQDWK VTALDIALSS  180
QRVQKPVECD HHHNGEDACL LIKRSCLAGM VVCEGSNGGV DQNRAIPSAP STGTQEPTRR  240
SSPTREAKGA RWRGRKKALH SSRKTPTRSF MSLSSGLQCL GVTDVTPVLA KTLTATDSRL  300
DQSRLQFAPR EVMESPLMSI LTPKECRSVH KLDNEDGLEL GAIDRHGYSY SMRLKYINSA  360
RQYRLMQGWA PFLTQNGVRK GDMVEVGGFR VEGKPMLTLL NYAAEGWIPE ETEAAHGLLM  420
LLNFNDEQGR KNRVQKSLSK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG047600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3ZC95	0.0	K3ZC95_SETIT; Uncharacterized protein
STRING	Pavir.J24729.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.3NG047600.1.p