PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG058800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 387aa MW: 41571 Da PI: 5.2361

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG058800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.2	3.3e-23	298	347	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF+lp+++AA++Lgvc+TvLK + R++ ++RWPhRkiks+ Pavir.3NG058800.1.p 298 SNLQLSDLARYFHLPMTQAARQLGVCATVLKTTSRRFHVPRWPHRKIKSI 347 79**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	287	367	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-20	299	347	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MADGHGEATE WEGPYDPLLV QDDFDDDVMY LLDMPAVVLD PAPLAVAQDN LLEWPATNYL 60 NNNSVDSRVP AHDAAVAGDR PCSTQYVGGG AGTSATASTS AAAAHDENAL LDCSGCQVLR 120 EVLHSNGLEA TKLCVHGASG VFYHATLDVY RINSEGMATA LTHQSYIDFR GRDYVWVKHY 180 LTDYAQRRAG GGYAVVHDSI SAFHDALCVS MNYYGGNADG GGDYCRGERA GAVGNGGGGD 240 QGQQELAGAA AEDVLIDQGD LPAAAGPSEP SAGNEQEQRE VRQQVGRSAL AIQRERASNL 300 QLSDLARYFH LPMTQAARQL GVCATVLKTT SRRFHVPRWP HRKIKSIDNH IDKLRRSGDN 360 GGAAAKREME RLIESRRKIY ADLLGQ*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MADGHGEATE WEGPYDPLLV QDDFDDDVMY LLDMPAVVLD PAPLAVAQDN LLEWPATNYL  60
NNNSVDSRVP AHDAAVAGDR PCSTQYVGGG AGTSATASTS AAAAHDENAL LDCSGCQVLR  120
EVLHSNGLEA TKLCVHGASG VFYHATLDVY RINSEGMATA LTHQSYIDFR GRDYVWVKHY  180
LTDYAQRRAG GGYAVVHDSI SAFHDALCVS MNYYGGNADG GGDYCRGERA GAVGNGGGGD  240
QGQQELAGAA AEDVLIDQGD LPAAAGPSEP SAGNEQEQRE VRQQVGRSAL AIQRERASNL  300
QLSDLARYFH LPMTQAARQL GVCATVLKTT SRRFHVPRWP HRKIKSIDNH IDKLRRSGDN  360
GGAAAKREME RLIESRRKIY ADLLGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG058800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	1e-110	uncharacterized protein LOC8084238
TrEMBL	A0A2T7E684	0.0	A0A2T7E684_9POAL; Uncharacterized protein
STRING	Pavir.Cb01863.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG058800.1.p