PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG065200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 207aa    MW: 20852.3 Da    PI: 5.1832
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG065200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06546641
             zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +++ e+   C  ++  lC+ C  + H+       H++v 
  Pavir.3NG065200.1.p  5 CDACGRAEAAVLCCADEAALCRRCDAAVHSAnrlagrHSRVA 46
                         *****************************6577888888775 PP
2zf-B_box24.46.1e-0869104437
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 
                          + C+ ++ek   +fC +++ llC  C ++ H    H
  Pavir.3NG065200.1.p  69 PACDICQEKTGYFFCLEDRALLCWPCDVAVHAAgaH 104
                          67****************************965673 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.712147IPR000315B-box-type zinc finger
SMARTSM003364.9E-8547IPR000315B-box-type zinc finger
CDDcd000214.22E-6547No hitNo description
SMARTSM003361.2E-1266113IPR000315B-box-type zinc finger
PROSITE profilePS501199.07266113IPR000315B-box-type zinc finger
CDDcd000212.00E-56995No hitNo description
PfamPF006434.3E-669104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKIGCDACGR AEAAVLCCAD EAALCRRCDA AVHSANRLAG RHSRVALLSS TAGGPTPDAA  60
IVDGSGSHPA CDICQEKTGY FFCLEDRALL CWPCDVAVHA AGAHVASHRR FLITGVRVGG  120
GVVVSPATSS GNGSSSAPDS SGNPTTLPDK ARPSSSVSAA AATEGLSGQQ WPWSEFLADD  180
VGVVMDHPDL CCPAEISEPG SSSLTG*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG065200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805930.15e-97B-box zinc finger protein 23-like
SwissprotQ9SYM21e-40BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2T7E6271e-104A0A2T7E627_9POAL; Uncharacterized protein
STRINGSi024510m1e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-31light-regulated zinc finger protein 1