PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG070500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 261aa    MW: 28275.4 Da    PI: 9.8458
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG070500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.91.9e-172368147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Pavir.3NG070500.1.p 23 RGHWRPGEDEKLRQLVEEHGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 68
                         899*****************************.***********996 PP
2Myb_DNA-binding56.18.6e-1875119147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ +
  Pavir.3NG070500.1.p  75 RRPFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 119
                          679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9051869IPR017930Myb domain
SuperFamilySSF466891.5E-2920116IPR009057Homeodomain-like
SMARTSM007173.2E-142271IPR001005SANT/Myb domain
PfamPF002495.6E-172368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-262476IPR009057Homeodomain-like
CDDcd001672.08E-142667No hitNo description
PROSITE profilePS5129425.69270124IPR017930Myb domain
SMARTSM007172.2E-1574122IPR001005SANT/Myb domain
PfamPF002498.2E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2077122IPR009057Homeodomain-like
CDDcd001672.20E-1277120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAPSSSTTTS GRANSRSQPP CPRGHWRPGE DEKLRQLVEE HGPQNWNSIA EKLEGRSGKS  60
CRLRWFNQLD PRINRRPFTA AEEERLLQAH RAHGNRWALI SRLFPGRTDN AVKNHWHVVM  120
ARRRRSYQRS AAGALLAAPG TAGCSPPPRR PPFQCFHFGG PPASAKTTTG NLCFATPGSG  180
PSTSLVSSSG TFSVRKCHAP TNVAFSSPRE AAAAPEDDDH RHDGMVRDEH GGTDDDDEDG  240
GGAAAKKKDV PFIDFLGVGI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30191233107B-MYB
1h88_C7e-301912354158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-301912354158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RRSYQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG070500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9724981e-118EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809406.11e-141transcription factor CSA-like
TrEMBLA0A3L6RBZ81e-147A0A3L6RBZ8_PANMI; Transcription factor MYB44-like
STRINGPavir.Cb01957.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-58myb domain protein 52