PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG097800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 96aa    MW: 10958.6 Da    PI: 7.0709
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG097800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.34.9e-0841785389
                 FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                          +raet ++C+ ++ + ++k +g+++vt+l leHnH+l
  Pavir.3NG097800.1.p 41 VPRAETGIHCQVRMGLVMDKnKGNYRVTDLILEHNHTL 78
                         57999*********9998888***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-54178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEENREGLLS SLLPQVGMEF NTIDEAWMFW IRYGVKKALS VPRAETGIHC QVRMGLVMDK  60
NKGNYRVTDL ILEHNHTLHL PQTSHLMASQ SASYW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG097800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104415e-42AC210441.1 Oryza glaberrima clone OG_BBa0001E03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302769.15e-38protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A2T7D7F01e-37A0A2T7D7F0_9POAL; Uncharacterized protein
TrEMBLA0A2T8KUY92e-35A0A2T8KUY9_9POAL; Uncharacterized protein
STRINGOS10T0571900-009e-31(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967