PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG099300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 451aa    MW: 48189 Da    PI: 8.3318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG099300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.1e-136488327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C++++rtG C++G++CkF+H+p
  Pavir.3NG099300.1.p 64 EPDCSYYMRTGLCRFGATCKFNHPP 88
                         789********************97 PP
2zf-CCCH38.81.6e-12109133327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Pavir.3NG099300.1.p 109 QPECQYYLKTGTCKFGATCKFHHPR 133
                          799********************96 PP
3zf-CCCH314.3e-10155179327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+ ++CkF+H+p
  Pavir.3NG099300.1.p 155 EKECAYYLRTGQCKFASTCKFHHPP 179
                          679********************97 PP
4zf-CCCH406.7e-13316341227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+f+++tG Ck+G+ CkF+H++
  Pavir.3NG099300.1.p 316 DQPECQFYMKTGDCKFGAVCKFNHPK 341
                          689*********************96 PP
5zf-CCCH37.54e-12361387127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C f++r+G+Ck+G++CkF H++
  Pavir.3NG099300.1.p 361 PGEPVCTFYSRYGICKFGPNCKFDHPM 387
                          5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-66188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9486189IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-106488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56689IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-46787IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441106134IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6108135IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5112134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5151180IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587152180IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7155179IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455314342IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5317343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5320342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6359386IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99360388IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9362387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAAAGAGAAG GGGGAGGGEG SSSSPAGVAI GPHHHGTAEE AMWQMTLGGG ESIEHGPFPE  60
RIGEPDCSYY MRTGLCRFGA TCKFNHPPNR KLAVAAARMK GEYPYRVGQP ECQYYLKTGT  120
CKFGATCKFH HPREKAAIAT RVQLNVLGYP IRPNEKECAY YLRTGQCKFA STCKFHHPPP  180
SNTMVAVRGS IYSPGQSATS PGQHTYPGAV TNWTLSRSAS FIASPRWPGH SGYAQMIVPQ  240
GLVQVPGWNP YAAQMGSSSP DDQQRTPGTT QYYASSHQSE TTAVGDHGMY PSYQPGSVPL  300
GLYAVQGDNI FPERPDQPEC QFYMKTGDCK FGAVCKFNHP KERLIPAPNC ALSPLGLPLR  360
PGEPVCTFYS RYGICKFGPN CKFDHPMGTL MYGTATSPTG DAPTMHYQLA SSPGHSERLL  420
DGGSGRSHRI SQTDSQQIPS GNGSTEREMS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.121760.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG099300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3L6REA40.0A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-156zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]