PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG099300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 410aa    MW: 44822.5 Da    PI: 8.5909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG099300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.78.1e-132347327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C++++rtG C++G++CkF+H+p
  Pavir.3NG099300.2.p 23 EPDCSYYMRTGLCRFGATCKFNHPP 47
                         789********************97 PP
2zf-CCCH38.91.4e-126892327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C+++++tGtCk+G++CkF+H++
  Pavir.3NG099300.2.p 68 QPECQYYLKTGTCKFGATCKFHHPR 92
                         799********************96 PP
3zf-CCCH31.23.8e-10114138327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+ ++CkF+H+p
  Pavir.3NG099300.2.p 114 EKECAYYLRTGQCKFASTCKFHHPP 138
                          679********************97 PP
4zf-CCCH40.15.9e-13275300227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+f+++tG Ck+G+ CkF+H++
  Pavir.3NG099300.2.p 275 DQPECQFYMKTGDCKFGAVCKFNHPK 300
                          689*********************96 PP
5zf-CCCH37.63.6e-12320346127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C f++r+G+Ck+G++CkF H++
  Pavir.3NG099300.2.p 320 PGEPVCTFYSRYGICKFGPNCKFDHPM 346
                          5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-62047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9482048IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-102347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-42646IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-66592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4416593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-66794IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-106892IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-57193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6110139IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587111139IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7114138IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455273301IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9275300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5276302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5279301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6318345IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99319347IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9321346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4324344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MWQMTLGGGE SIEHGPFPER IGEPDCSYYM RTGLCRFGAT CKFNHPPNRK LAVAAARMKG  60
EYPYRVGQPE CQYYLKTGTC KFGATCKFHH PREKAAIATR VQLNVLGYPI RPNEKECAYY  120
LRTGQCKFAS TCKFHHPPPS NTMVAVRGSI YSPGQSATSP GQHTYPGAVT NWTLSRSASF  180
IASPRWPGHS GYAQMIVPQG LVQVPGWNPY AAQMGSSSPD DQQRTPGTTQ YYASSHQSET  240
TAVGDHGMYP SYQPGSVPLG LYAVQGDNIF PERPDQPECQ FYMKTGDCKF GAVCKFNHPK  300
ERLIPAPNCA LSPLGLPLRP GEPVCTFYSR YGICKFGPNC KFDHPMGTLM YGTATSPTGD  360
APTMHYQLAS SPGHSERLLD GGSGRSHRIS QTDSQQIPSG NGSTEREMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.121760.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG099300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3L6REA40.0A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-155zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]