PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG106600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 629aa    MW: 73064 Da    PI: 8.5215
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG106600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.62e-1811129189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............................tekerrtraetr 59 
                          +fYn+YAk++ Fsvr+s ++ s  n+e  k +fvC+keg+++++k++                                 k+r++++  +
  Pavir.3NG106600.1.p  11 EFYNSYAKRIDFSVRTSPTRLSGVNREQNKVEFVCNKEGRQRKTKEEqpvaetddsnfdedsdhndcdegaekkkkldGGKKRKREKMMH 100
                          6*****************************************999999*************************999988889999999** PP

                 FAR1  60 tgCkaklkvkkekdgkwevtkleleHnHel 89 
                          t+Ckak++vk+   gkw+v++++ +Hn +l
  Pavir.3NG106600.1.p 101 TDCKAKMVVKLI-AGKWHVINFVPDHNLDL 129
                          ************.9*************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1611129IPR004330FAR1 DNA binding domain
PfamPF105513.9E-32227319IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
QAFSTKQEAR EFYNSYAKRI DFSVRTSPTR LSGVNREQNK VEFVCNKEGR QRKTKEEQPV  60
AETDDSNFDE DSDHNDCDEG AEKKKKLDGG KKRKREKMMH TDCKAKMVVK LIAGKWHVIN  120
FVPDHNLDLV LKPSLKNFLR SHKGIPKEEK DFIALLHGSN LRTGRIMQLM NEFYGSMQLV  180
PYEGKDVSNF RSTIRKAEKY KDITELDACL VDGAARHAYI ELYNDLVSFD ATYMTNMYDM  240
PFAPFIGINK HGQSFMLGCG FIRDEKTPSY VWLFETFLGA MQGKAPVSII TDQDGAMRCA  300
IAQTFPITNH RNCRWHIMDK FTGTIGPILD KDEKLEDDFK ECMNYTVSPD EFEAKWSAMI  360
SKYNLQENVH FQRLYAIRNS FVPAYYLHCF YPFLQSTQRS EGFNAVLKKY VNPDMSILHF  420
VRQYQKIQDK CLVAQDGQDF RTDDKERRRW SRYPIEKHAS TVYTKNLFYR FSKEFEKTAE  480
YDVTPERQFQ YLLVPNSNFV YGYVKRTYLV TAVVEEESYY CECSKWTQEA IQGGENAEPN  540
AHVPAEFIAR GMPLNTKRTL WFTNLSTAFA SLAVEGCVSK ETYTVMDNHI KLMQAEIAEI  600
KQRKKSNARK ARGTNRARLF FEENGIKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19097KKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG106600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5RL590.0A0A1Z5RL59_SORBI; Uncharacterized protein
STRINGPavir.Cb01557.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-70FAR1-related sequence 5