PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG140900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 195aa    MW: 19658.2 Da    PI: 8.7255
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG140900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-2055104356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++aa+++++g+
  Pavir.3NG140900.1.p  55 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDAAAREIRGA 104
                          9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3154111IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2254112IPR016177DNA-binding domain
PfamPF008473.0E-1454103IPR001471AP2/ERF domain
PROSITE profilePS5103224.64554111IPR001471AP2/ERF domain
SMARTSM003804.2E-3454117IPR001471AP2/ERF domain
PRINTSPR003671.6E-105566IPR001471AP2/ERF domain
CDDcd000189.71E-1855110No hitNo description
PRINTSPR003671.6E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MCGGAIIADF VPAGARRTAS SAAADSVSAS ILSGDGELMV EPAARAPAPG RKTAYRGIRR  60
RPWGRWAAEI RDPRKGARVW LGTYATPEDA ARAYDAAARE IRGAKAKLNF PPAVGAGAPA  120
AKRGRKVPPA AEESSGSSSS PAAAVVGPPG VGGADETLRD CMSGLEAFLG LEAAALEGGA  180
ADVQAWDAVD LMFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2155117669ATERF1
3gcc_A2e-2155117669ATERF1
5wx9_A6e-21551181579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51271e-137callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG140900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643973e-82BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.
GenBankBT0873913e-82BT087391.1 Zea mays full-length cDNA clone ZM_BFb0059P19 mRNA, complete cds.
GenBankEU9518943e-82EU951894.1 Zea mays clone 1062095 ethylene responsive element binding protein 2 mRNA, complete cds.
GenBankHQ8587613e-82HQ858761.1 Zea mays clone UT1602 AP2-EREBP transcription factor mRNA, partial cds.
GenBankJX4699163e-82JX469916.1 Zea mays subsp. mays clone UT3172 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808872.14e-87ethylene-responsive transcription factor ERF071-like
TrEMBLA0A2S3HCV59e-86A0A2S3HCV5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EEX99e-86A0A2T7EEX9_9POAL; Uncharacterized protein
STRINGPavir.J05942.1.p4e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-23ethylene-responsive element binding protein