PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG151200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 315aa    MW: 33051.4 Da    PI: 6.1251
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG151200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.9e-25110170259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r+++dp+++ +tY g H+++
  Pavir.3NG151200.1.p 110 EDGHAWRKYGQKEIQNSKHPKAYFRCTHKydqQCAAQRQVQRCDDDPDAFRVTYIGVHTCR 170
                          8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-2697172IPR003657WRKY domain
SuperFamilySSF1182901.31E-24103172IPR003657WRKY domain
PROSITE profilePS5081120.277104172IPR003657WRKY domain
SMARTSM007741.7E-34109171IPR003657WRKY domain
PfamPF031069.9E-23110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAAAAAPYAQ VMEDMRRGRD LATQLQALLR DSPEAGRLVD RILHAMSRTI ETARAAAAAE  60
EGSEGQSEVT CAGSGAGKRK AAGGGGDKRA ACRRRAHNSS TVTVTIKDIE DGHAWRKYGQ  120
KEIQNSKHPK AYFRCTHKYD QQCAAQRQVQ RCDDDPDAFR VTYIGVHTCR DPAAIAPVVL  180
HSSDELHAGS RLISFAPNAS ATTASTTTTG NTSQQGDHKG AALLAGLRPL KQEAGAGEQE  240
EVLSSLTPAG NSAAAEAARN AVATPGPDQG DVTSGLQHCY GGGFAVADMA HLDDGTFDLD  300
DLVGFGFDQG QDDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-37103170269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG151200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586310.0KU058631.1 UNVERIFIED: Panicum miliaceum WRKY27-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962450.11e-168probable WRKY transcription factor 70
TrEMBLA0A3L6SUS21e-172A0A3L6SUS2_PANMI; Putative WRKY transcription factor 70
STRINGPavir.Ca02012.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-18WRKY DNA-binding protein 70