PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG151400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 690aa    MW: 79457 Da    PI: 8.1439
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG151400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.51.7e-2126118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA   GFsvrks+ + +++++e t r++ Cs++ +re++  k + k+rr+r  tr+gC akl++ +++ +g+w+v+++  eHn +
  Pavir.3NG151400.1.p  26 QFYNTYALGKGFSVRKSYVEWNSEHTELTLRRYLCSRQDYREDKYVKkEIKKRRPRDITRVGCPAKLVIALDRnTGQWYVKNFIDEHNRP 115
                          6***************************************99987663679999*****************999**************99 PP

                 FAR1  89 lap 91 
                          lap
  Pavir.3NG151400.1.p 116 LAP 118
                          975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2026118IPR004330FAR1 DNA binding domain
PfamPF105518.2E-29238330IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MADLESLLEY NEIVRKIFAN KDEGFQFYNT YALGKGFSVR KSYVEWNSEH TELTLRRYLC  60
SRQDYREDKY VKKEIKKRRP RDITRVGCPA KLVIALDRNT GQWYVKNFID EHNRPLAPAD  120
LSCLLCSHRE ISDAQKAEIV ELGVAGIRKH QIYEIMEMQY GGYDKVGYTS RDLYNFCHLY  180
KEDIIADGDA QTIISHLKER QNRDSEFFKY MIDGKGHVQG MFWCDTQCML DYAAFGDVVV  240
FDSTYKTNRY NLPLVPFVGV NHHYRTTLFG CGIISHENTD SYVWLLKIFT KANAQKHPVS  300
VITDGDLVMQ SAISVVWPNS PHMLYGWHIE LNLVRNVHND TLKGALRVFL HDLCSIEEIE  360
RKWQVFLADN KVKEDSWLYQ MYEVRQTWLY HVGHCFLGLT SNQRSESMKS RLQMKLDVRR  420
NEADDDAKAL QSAPFTEPDA SVLEINAKER FTPNVFKVKV QFSMEAAKKC SLIEILDGDD  480
TIEYIVGRRD RDILYYVKCE LTGEANLKRI SCSCCKLQSL GAPYSHIFFV LGLRDESKLP  540
NCCVLEWWTM GAKRAFPTTR KSTMYDYSAT LLRFRELRNL SLAAGFVASH STKAYERTKC  600
VLEQEATVIV PNAGANEGKM YGPVLPQAPE VDCEEFRDVL DPMTVPGRGA PKKKLKSSLD  660
KTKSTMKSSS KCSLCRGSGH NRRTCFLRPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1650656PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG151400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Ib01630.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-71FAR1-related sequence 5