PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG151500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 417aa    MW: 44331.7 Da    PI: 6.9913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG151500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.5e-27224283258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Pavir.3NG151500.1.p 224 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFMYEVTYCGNHTC 283
                          8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-27216283IPR003657WRKY domain
SuperFamilySSF1182901.19E-24221283IPR003657WRKY domain
SMARTSM007746.8E-38223285IPR003657WRKY domain
PROSITE profilePS5081121.643224281IPR003657WRKY domain
PfamPF031062.0E-25224283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MHGLAAHPGP PLALLGGSLD HRDSNSITRE LVVVAGRRAM DDAVLQIIED AFGLARELMA  60
ELQATQQNDP AYLAGRCQRI AQAYLTASRM LGPHPHGADD LSPRALPPPH HPLGDGGSGS  120
SHGHLQQLEL LRPFLGGGGA PSSAPFQQHL GRLLEPSPFN TSTTSPDMFG AGTSGGPVRR  180
QASSSRSSPP VQPRQHRMRR RESGERMTMM VPVQRTGNTD LPPDDGYTWR KYGQKDILGS  240
RYPRSYYRCT HKNYYGCEAK KKVQRLDDDP FMYEVTYCGN HTCLTSTMPL LTLPAPTTTA  300
VSSAAASMLT NSPTSSSAAA ILAGQDLVMA PAAEHPTPAL STAIQLGISW MPSTLISPSA  360
GEGSSSAQMD VPAASGTRDT EFPVMDLADA MFNSGSSGGS SMDGIFPAHH HDQRDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21224283968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG151500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878172e-85AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809471.10.0uncharacterized protein LOC112887503
TrEMBLA0A2T7EFG40.0A0A2T7EFG4_9POAL; Uncharacterized protein
STRINGPavir.Ca01708.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-40WRKY DNA-binding protein 55