PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG155100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 329aa    MW: 34777.2 Da    PI: 8.3186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG155100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33202260260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g Hnh+k
  Pavir.3NG155100.1.p 202 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGAHNHPK 260
                          8********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.613196261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-29196261IPR003657WRKY domain
SuperFamilySSF1182905.1E-26199261IPR003657WRKY domain
SMARTSM007741.0E-35201260IPR003657WRKY domain
PfamPF031066.8E-25202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASSTGSLEH GAFTFTPPPF ITSFTELLSG CGDMLGADQE RSPRGLFHRG ARGGVPKFKS  60
AQPPSLPISP PPMSPSSYFA IPAGLSPAEL LDSPVLLNSS SNILASPTTG AIPALRFDWK  120
QAAELIASQQ QEESRAAGGG FNDFSFHTAS SNAMPTQTAS FPTFKEQQQV EAVNKQSVAA  180
ATNNNKAGSG NNNNSNSNTK LEDGYNWRKY GQKQVKGSEN PRSYYKCTYH SCSMKKKVER  240
SLADGRITQI VYKGAHNHPK PLSTRRNSSG GVAAAEDQQA ASGLSQAAGC GPEHSGATPE  300
NSSVTFGDDE AENGSQRSDG DKPDAKRW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-162012611474WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.4315e-33root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG155100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586030.0KU058603.1 UNVERIFIED: Panicum miliaceum WRKY16-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A2T7EFC50.0A0A2T7EFC5_9POAL; Uncharacterized protein
STRINGPavir.J27870.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.13e-46WRKY DNA-binding protein 26