PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG155700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 108aa MW: 11572 Da PI: 4.8996

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG155700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.8e-07	65	103	1	39
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 +f+ Y+ ++GF+vrk ++++s+ +g +t+++fvC + Pavir.3NG155700.1.p 65 NFWVIYGGRMGFDVRKCYTNTSDIDGLVTSSRFVCLFQS 103 69*********************************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MQSPAAQSGP ASARTAAGHG AMDGAQQLVE ESPTECIMHN CGMAATPFWI PQFGMAFSSF 60 DEAWNFWVIY GGRMGFDVRK CYTNTSDIDG LVTSSRFVCL FQSRSSG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.36460	2e-57	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG155700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619119.1	4e-22	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7DZB7	9e-39	A0A2T7DZB7_9POAL; Uncharacterized protein
STRING	Sb07g023760.1	2e-29	(Sorghum bicolor)

Link Out ? help Back to Top
Phytozome	Pavir.3NG155700.1.p