PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG173000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 192aa    MW: 20498.3 Da    PI: 6.6219
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG173000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.48.4e-37201201101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfpa+qp+++a vh +FG+sn +++l++lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ +
  Pavir.3NG173000.1.p  20 RCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNATRVLQSLPVQERGRAADTMAAEARWRVQDPVYGSTGVIDRLQQEIRAV 109
                          6***************************************************************************************** PP

               DUF260  91 kaelallkeel 101
                          ++ela+++++l
  Pavir.3NG173000.1.p 110 QHELATTRAQL 120
                          ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.24419120IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-3620117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEVADHHQDY GGGGSSIPRR CAACKYLRRR CAPGCVLAPY FPASQPRRYA DVHAVFGTSN  60
ATRVLQSLPV QERGRAADTM AAEARWRVQD PVYGSTGVID RLQQEIRAVQ HELATTRAQL  120
AVHARAAMAP PLGTQPMPPS LLLPPPPQPL AAAAAAAVEV VHAGAHGVAV QEEDEALLMD  180
PEEFLDLDGR L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-332112412115LOB family transfactor Ramosa2.1
5ly0_B4e-332112412115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG173000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683529.18e-76LOB domain-containing protein 24
SwissprotP594688e-36LBD24_ARATH; LOB domain-containing protein 24
TrEMBLK3YMP03e-80K3YMP0_SETIT; Uncharacterized protein
STRINGPavir.Cb01140.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.14e-38LOB domain-containing protein 24