PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG184700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 168aa    MW: 18059.2 Da    PI: 10.9872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG184700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064106128123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cg  F +   L  H+r+H
  Pavir.3NG184700.1.p 106 HACGTCGLGFATGKALGGHMRRH 128
                          67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-769128No hitNo description
PfamPF139129.2E-107094IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3657097IPR007087Zinc finger, C2H2
SMARTSM003550.527092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
PfamPF139121.8E-7105129IPR007087Zinc finger, C2H2
PROSITE profilePS501578.704106128IPR007087Zinc finger, C2H2
SMARTSM003551.4106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MERRQDDLRF IEEDEDGHND GHRAAAASFH HDVFLSLSCG SSSSSSSSGE AAGSTPPRTR  60
RHRRRRGQAF ACTTCGRQFA TFQALGGHRT SHLRRPPAKP KRVVAHACGT CGLGFATGKA  120
LGGHMRRHRW AAGPAMGPGD LDLTQVIVLK ERPSSTSSSL QLLDLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG184700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317868.15e-38zinc finger protein ZAT5-like
TrEMBLA0A3L6Q4K82e-41A0A3L6Q4K8_PANMI; Zinc finger protein ZAT11-like
STRINGPavir.Cb00700.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-18C2H2 family protein