PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG240000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 151aa    MW: 16704.7 Da    PI: 7.7886
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.77.8e-162483463
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                          +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++  +  ++a++++e+
  Pavir.3NG240000.1.p 24 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVEQEN 83
                         58*****************************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-112075No hitNo description
SMARTSM003381.2E-172185IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.32386IPR004827Basic-leucine zipper domain
PfamPF001701.9E-122483IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.38E-102575No hitNo description
CDDcd147023.33E-162677No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSSSSLSPAG RMSGSDGDSA ADTHRREKRR LSNRESARRS RLRKQQHLDE LVQEVARLQA  60
ENARVAARAA DIASQYARVE QENTVLRARA AELGDRLRSV NEVLRVVEEF SGVAMDIQEE  120
IPADDPLLRP WQLPYPAAAM PIGGAHMLQY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743RRSRLRK
23744RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.31700.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG240000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342891e-178BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBankBT0884081e-178BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBankEU9647361e-178EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808697.11e-102ocs element-binding factor 1
SwissprotP240689e-96OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A2T7EHZ01e-101A0A2T7EHZ0_9POAL; Uncharacterized protein
TrEMBLA0A3L6R9761e-101A0A3L6R976_PANMI; Ocs element-binding factor 1
STRINGPavir.Cb00560.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.15e-30basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]