PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG243200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 240aa MW: 26659 Da PI: 6.2309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG243200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.6	2.2e-09	102	201	26	89
FAR1 26 geitkrtfvCskegkreeekkk.....................................tekerrtraetrtgCkaklkvkkekdgkwev 78 +e k fvC+keg+ ++ k+ k+r+++ ++t+Cka++++k+ ++ +v Pavir.3NG243200.1.p 102 REQHKVIFVCNKEGHGRKAKEGdpanesddsndekrgsepensnkgdgdedaekrkkldGGKKRKRERMHHTDCKARMVIKLI-VDRCHV 190 4566788******999988899*************************99999878888899999*********.9999 PP FAR1 79 tkleleHnHel 89 + + +HnHel Pavir.3NG243200.1.p 191 IFFAPDHNHEL 201 **********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-7	102	202	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDLNEIPPEF HCDFLDCSDA NPSYCTQAVE AIALGGEHDI VQVTGHQVLS NVEATVDNCN 60 LAEKPKDVQT IADSTTGVAD VEEVWSTPPI PYIGQIFSSL TREQHKVIFV CNKEGHGRKA 120 KEGDPANESD DSNDEKRGSE PENSNKGDGD EDAEKRKKLD GGKKRKRERM HHTDCKARMV 180 IKLIVDRCHV IFFAPDHNHE LIVKSSLKKF MRSHKGIPKT EKDFIALLHG CNLSTGRIM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG243200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6QSR2	2e-87	A0A3L6QSR2_PANMI; Uncharacterized protein
STRING	Pavir.Cb00546.1.p	1e-179	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Link Out ? help Back to Top
Phytozome	Pavir.3NG243200.1.p