PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG250000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 234aa    MW: 25301.9 Da    PI: 4.9697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG250000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-1963112255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+++AeIrdp     +  kr++lg+f+taeeAa+ ++ a+ +l+g
  Pavir.3NG250000.1.p  63 QFRGVRQRP-WGKFAAEIRDP-----NlgKRVWLGTFDTAEEAAAVYDGAAIRLRG 112
                          69*******.**********9.....556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-3062121IPR001471AP2/ERF domain
PROSITE profilePS5103222.93263120IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2163122IPR016177DNA-binding domain
CDDcd000181.26E-3363122No hitNo description
SMARTSM003801.6E-3863126IPR001471AP2/ERF domain
PfamPF008474.8E-1164112IPR001471AP2/ERF domain
PRINTSPR003672.7E-106475IPR001471AP2/ERF domain
PRINTSPR003672.7E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDAPGRDHFA DPDDATDSDS DDSRRRSVRV IDLLPPQRKK LGHFPSYDRS GGKWQGQGRG  60
RRQFRGVRQR PWGKFAAEIR DPNLGKRVWL GTFDTAEEAA AVYDGAAIRL RGRRAVTNFP  120
LSPSSATPFS SVPSPMSSTT IASTPTPPVC SSEVEISSAS TPSTQSSSVI DADEDVVGMR  180
WFEDKPFESM EFCLPSAPTG SQCEFGGLGD LDDLFSLEPE PASHNCPGGN LHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2362125468ATERF1
3gcc_A1e-2362125468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG250000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828366.11e-75pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2T7CJE12e-76A0A2T7CJE1_9POAL; Uncharacterized protein
STRINGPavir.J29117.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.17e-18ERF domain protein 10