PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG254300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 523aa    MW: 59752.9 Da    PI: 6.8683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG254300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.35e-094112439127
                  NAM  39 iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd.kevlsk..kgel...........vglkktLvfykgrap 114
                          + +v+PwdLp            F+  ++    g+ + r t+sgyWk++  +  ++ s+  +  +            g+++tL fy   ++
  Pavir.3NG254300.1.p  41 LADVDPWDLP----------PLFAMPKE---MGSSSLR-THSGYWKEKEDEfIAIRSEggG--EgsssasrspsyEGVRRTLEFY---EH 111
                          5555666665..........12333322...3455566.799****765531344444550..245567778888**********...45 PP

                  NAM 115 kgektdWvmheyr 127
                          + +ktdWv+hey+
  Pavir.3NG254300.1.p 112 NDTKTDWVIHEYQ 124
                          5578********8 PP
2NAM22.92.3e-0733038377127
                  NAM  77 atksgyWkatgk.dkevlskkgel.....vglkktLvfykgrapkgektdWvmheyr 127
                          +t++g+W++  + dk +  + g+l      glk+tL fy   + +g+k dW+m ey+
  Pavir.3NG254300.1.p 330 KTHQGRWEEIKSnDKLIAIRMGQLpvpqyAGLKRTLQFY---HDDGTKMDWIMLEYH 383
                          5899****887725555555444467777**********...78899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.8181144IPR003441NAC domain
SuperFamilySSF1019411.18E-1228144IPR003441NAC domain
PfamPF023651.6E-745124IPR003441NAC domain
PROSITE profilePS5080812.504216277IPR003656Zinc finger, BED-type
SMARTSM006141.5E-6216271IPR003656Zinc finger, BED-type
PfamPF028921.4E-5219266IPR003656Zinc finger, BED-type
SuperFamilySSF576676.43E-5220267No hitNo description
PROSITE profilePS510057.479246407IPR003441NAC domain
PfamPF023651.5E-5301383IPR003441NAC domain
SuperFamilySSF1019413.53E-9311405IPR003441NAC domain
SMARTSM006140.038477518IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEADDAAAKL RINNDAAEEV CRRRWDRRRS FYRTVQANAG LADVDPWDLP PLFAMPKEMG  60
SSSLRTHSGY WKEKEDEFIA IRSEGGGEGS SSASRSPSYE GVRRTLEFYE HNDTKTDWVI  120
HEYQYLDDKM FLQEDVVVRK VFNKKNTDRV PSYFKDFDKA MEGYHEKFAK HGSRFAYEDV  180
KSKLSEFIAK SFTLGGSEEA GSGCWEFPTA SAVPDGQSDD VWQHFTRIKT KDPDVVYAAC  240
HRCDRVLKAH SKHQGTSQLR RHLNTKTCTC SNNPSSTAED QEILRELRVN LDLYKQGKME  300
GWVDSPDLNG SVDPWDLSSP RYCTNSLSLK THQGRWEEIK SNDKLIAIRM GQLPVPQYAG  360
LKRTLQFYHD DGTKMDWIML EYHQVDVYNT PDLLLEGSMV FCKVIQIFKD AIKELERMWN  420
GDDDNSEDCY IGEREEEVAA CASTLFRDCL LGEGVQGDQS RVGKRKRTGA PQGAPPSKVW  480
LYFTKIYTTD PDGVTRFARK SKNGTSQFIR HNKSCSSKRP KV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.353781e-169callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG254300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807167.10.0uncharacterized protein LOC112885745
TrEMBLA0A2S3HEW30.0A0A2S3HEW3_9POAL; Uncharacterized protein
STRINGPavir.Cb00459.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.17e-06NAC domain containing protein 36