PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG254500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 201aa    MW: 22573.5 Da    PI: 9.2799
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG254500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.53.4e-061261473253
                          HHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  32 eLAkklgLterqVkvWFqNrRa 53 
                           LA+++gLt +q+++WF N R 
  Pavir.3NG254500.1.p 126 LLARQTGLTRSQISNWFINARV 147
                          59*****************995 PP
2BELL97.98.6e-3220791372
                 BELL 13 lslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                         +s    Vd++Ykqy++q+q v+ssF++vag g+akpYt+lAl++iSrhFrcLkdai +qi
  Pavir.3NG254500.1.p 20 VSFSATVDRKYKQYYHQMQSVVSSFDVVAGPGAAKPYTALALRTISRHFRCLKDAINDQI 79
                         677889****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-6177IPR006563POX domain
PfamPF075263.1E-272075IPR006563POX domain
Gene3DG3DSA:1.10.10.606.7E-20103156IPR009057Homeodomain-like
SuperFamilySSF466891.92E-11104154IPR009057Homeodomain-like
CDDcd000868.06E-6105146No hitNo description
PROSITE profilePS500718.778106152IPR001356Homeobox domain
PfamPF059209.2E-14109147IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAPHTADFTC AFHEAKFVFV SFSATVDRKY KQYYHQMQSV VSSFDVVAGP GAAKPYTALA  60
LRTISRHFRC LKDAINDQIN VIRKKLGEKE NSSSKEGKLT RGTIILRAWL YEHLLHPYSA  120
DSDNLLLARQ TGLTRSQISN WFINARVHLW EPIIEDIYKE EIGDIEQDSN SSSDNAPRRK  180
GKMASSGQQG GPEKFYTSGL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182PRRKGKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG254500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963319.16e-91BEL1-like homeodomain protein 7
RefseqXP_004963320.16e-91BEL1-like homeodomain protein 7
RefseqXP_004963321.16e-91BEL1-like homeodomain protein 7
SwissprotQ9SIW15e-64BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A3L6SYV02e-90A0A3L6SYV0_PANMI; BEL1-like homeodomain protein 7
STRINGPavir.J06816.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.12e-66BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]