PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG273400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 183aa    MW: 20659.4 Da    PI: 9.0388
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG273400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY236.94.6e-7351703170
                YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                          +  + ++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ l+ +++  +    + +e+ k ++ n +  +  ++s+
  Pavir.3NG273400.1.p   5 IAAAVDHVCYVHCNFCNTVLAVSVPGNSMLNTVTVRCGHCTNLLSVNLRALMHSLPEQQD--QLQLFDSHENIKAHGINGSHLEFGSSSS 92 
                          66789***************************************************9886..4455567999999999999999999999 PP

                YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +   +++ l++n+++ ++++    +PPekrqr+Psaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Pavir.3NG273400.1.p  93 KFRLPMMYLPQNQHHLLQEQTLNAHPPEKRQRIPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 170
                          999999999*99999999888899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-729170IPR006780YABBY protein
SuperFamilySSF470957.72E-8117164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.3E-5118164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSSQIAAAVD HVCYVHCNFC NTVLAVSVPG NSMLNTVTVR CGHCTNLLSV NLRALMHSLP  60
EQQDQLQLFD SHENIKAHGI NGSHLEFGSS SSKFRLPMMY LPQNQHHLLQ EQTLNAHPPE  120
KRQRIPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL SPRTGGWQEA  180
RR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.25270.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG273400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0358122e-61BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBankBT0416682e-61BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
GenBankBT0684092e-61BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
GenBankKJ7268492e-61KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804907.11e-122protein YABBY 6-like isoform X1
SwissprotQ2QM173e-76YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A2S3HFJ41e-120A0A2S3HFJ4_9POAL; Uncharacterized protein
STRINGSi023308m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-57YABBY family protein