PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG276000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 107aa    MW: 11827.6 Da    PI: 11.4324
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG276000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA23.61.7e-073268238
            CBFB_NFYA  2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38
                         +p++V  KQy++I++ R++R ++ee +  ++k r p+
  Pavir.3NG276000.1.p 32 APVFVREKQYDAIIRLRERRRRVEEAREGRSKLRNPF 68
                         69***********************888878888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020455.3E-43368IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MSVENNGSSE MGAGQRMAVG RKLLPPITPG GAPVFVREKQ YDAIIRLRER RRRVEEAREG  60
RSKLRNPFQD VLKGTLSRPR ATRKVPMEAS WCHSAPPKET VACPSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG276000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808608.18e-28uncharacterized protein LOC112886824
RefseqXP_025808609.18e-28uncharacterized protein LOC112886824
RefseqXP_025808610.18e-28uncharacterized protein LOC112886824
RefseqXP_025808611.18e-28uncharacterized protein LOC112886824
TrEMBLA0A2S3HFJ82e-26A0A2S3HFJ8_9POAL; Uncharacterized protein