PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG289200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 522aa    MW: 60259.8 Da    PI: 8.4439
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG289200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.57.6e-071145136
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCs 36
                         ++Yn+YA +vGFsvrk +sk +  +g+  ++ fvC+
  Pavir.3NG289200.1.p 11 DMYNTYAGQVGFSVRKGNSKLR-GDGTSRQKYFVCK 45
                         58***************87765.889899******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105517.2E-11153199IPR018289MULE transposase domain
PROSITE profilePS509669.718372410IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-5385412IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MAFQSGKKAF DMYNTYAGQV GFSVRKGNSK LRGDGTSRQK YFVCKSCSVC NARVQFSVSR  60
EGIWTVQKVV LEHNHYLAIP NKREKLRSQQ SVQEADRKLI GEIRKAGMQP AQVYEFMKEF  120
YGGADKVPFS RMDCNNEIGH GQSIMDYTCF GDVVSFDTTF QTNKFEMPFA PILGANHHKQ  180
TIIFGAVLLF NETIESFKHP EKFLPDFKRS VYEDRSEFYF QKMWDELLHE YELEDNEWMS  240
NLYALRTKWV AMYRDSFTAD MNSTQRSEGM NNVSKKRFRR KLGLSELLVE CEKVCNSLRR  300
NELEEDFNSR RKSPVTCIPR LPLLKTAAES YTGRMYKELE EEFKEQFSFS CNLIQTEGSI  360
LTYMVTHMHS DYGAIVTFNK ADVSITCACR KYESIGILCK HAFKVLNVNN VFILPPKYIL  420
HRWTKYAIRG FYIEKQGSEM ESLQTHAARI SRKATSVALK CSLSKELLDD LEKAIDKLDS  480
EADNSLSKMQ EQSNEVPLVS TDYTTDTLKG TIWFRVPQVV K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG289200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432580.0AC243258.1 Panicum virgatum clone PV_ABa103-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670948.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ10HU30.0Q10HU3_ORYSJ; Os03g0576100 protein
STRINGSb06g016820.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1508638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-66FAR1-related sequence 5