PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG293700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 223aa    MW: 24694.6 Da    PI: 10.6329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG293700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-1578128355
                          HHHHHHHH.HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerEr.rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h+  E+ rRR++iN++f +L++l+P +   ++kK +  ++Le++++Y+ksLq
  Pavir.3NG293700.2.p  78 ETHSLTEKvRRRRKINEKFKTLQQLVPGC---DNKKSNQTSTLEQTIKYMKSLQ 128
                          57888898678899***************...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.3776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-1378132No hitNo description
Gene3DG3DSA:4.10.280.104.9E-1778135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1678149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1379128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1381133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNIYLIYGAK IHLGFQTIVK SLQLQFKHTT RDIYIINNNR NSCAGGTKNH TIFFWQDTVC  60
NCSGRGKQRG GTKSHHSETH SLTEKVRRRR KINEKFKTLQ QLVPGCDNKK SNQTSTLEQT  120
IKYMKSLQHQ IQAMSFWCRI KPASAALLHP VDVPPPYYYP AAAAGALPLP PPAAFALDPG  180
FPVRGHAWKA PGVVLGPPPP TSSMLPAFAA ARRSHCSHLT LQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG293700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7EIY71e-30A0A2T7EIY7_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-15bHLH family protein