PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG293700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 222aa    MW: 24595.4 Da    PI: 10.6329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG293700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.83.9e-1878127355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h+  E+rRR++iN++f +L++l+P +   ++kK +  ++Le++++Y+ksLq
  Pavir.3NG293700.3.p  78 ETHSLTEKRRRRKINEKFKTLQQLVPGC---DNKKSNQTSTLEQTIKYMKSLQ 127
                          69**************************...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.74975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1678127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-1578131No hitNo description
SuperFamilySSF474593.79E-1978148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1978134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1581132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNIYLIYGAK IHLGFQTIVK SLQLQFKHTT RDIYIINNNR NSCAGGTKNH TIFFWQDTVC  60
NCSGRGKQRG GTKSHHSETH SLTEKRRRRK INEKFKTLQQ LVPGCDNKKS NQTSTLEQTI  120
KYMKSLQHQI QAMSFWCRIK PASAALLHPV DVPPPYYYPA AAAGALPLPP PAAFALDPGF  180
PVRGHAWKAP GVVLGPPPPT SSMLPAFAAA RRSHCSHLTL Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489KRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG293700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7EIY72e-32A0A2T7EIY7_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.15e-17bHLH family protein