PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG294100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 372aa MW: 38878.8 Da PI: 10.2909

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG294100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.7	1.1e-11	270	308	33	71
trihelix 33 evskkmrergferspkqCkekwenlnkrykkikegekkr 71 v ++ r++g+ r+p+qC+++w+nl+++ykki+e++ + Pavir.3NG294100.1.p 270 VVTEYYRRHGVDRGPVQCRKSWSNLAGDYKKIRESKAEV 308 467888****************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAKTRCGYLQ VSCQGHTNHT SCPHTSACAY PSVMLASQKS SQQEWTVSAA RLGTEGLPCF 60 LRLGAAPPLL PLPEASTGRT PARRGRGSHP RWRAAEGGAE RGQGGHPHQI QECAGGGPCG 120 GHGQGRSRVL PPWQPPSPPR WASVAPSPSG HGRCGPPLLP RSVARMVAMA RARRCGRGRV 180 ACAGRSRGML QEARGGIDEM GSVLGKEEEA RLLGRTMKQA VRLQSVLGRG IDLLGRGDRA 240 RVAAAAVDTA RDPGAHRGEV GGGEERVRAV VTEYYRRHGV DRGPVQCRKS WSNLAGDYKK 300 IRESKAEVTA ALDGGRGDNG AGLSSSSEDE DDQEDATPSP TPTPAAPVAL PISGGDPRPV 360 PTAALTRLGV V*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAKTRCGYLQ VSCQGHTNHT SCPHTSACAY PSVMLASQKS SQQEWTVSAA RLGTEGLPCF  60
LRLGAAPPLL PLPEASTGRT PARRGRGSHP RWRAAEGGAE RGQGGHPHQI QECAGGGPCG  120
GHGQGRSRVL PPWQPPSPPR WASVAPSPSG HGRCGPPLLP RSVARMVAMA RARRCGRGRV  180
ACAGRSRGML QEARGGIDEM GSVLGKEEEA RLLGRTMKQA VRLQSVLGRG IDLLGRGDRA  240
RVAAAAVDTA RDPGAHRGEV GGGEERVRAV VTEYYRRHGV DRGPVQCRKS WSNLAGDYKK  300
IRESKAEVTA ALDGGRGDNG AGLSSSSEDE DDQEDATPSP TPTPAAPVAL PISGGDPRPV  360
PTAALTRLGV V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG294100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-12	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG294100.1.p