PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG302500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 358aa    MW: 40069.4 Da    PI: 5.2027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG302500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.54.2e-098116834128
                  NAM  34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel.........vglkktLvfykg 111
                          i+++ ++++ +Pw+L        +   +F++++k       +  +t+ g+Wk++ ++ + ++      +         +g k+tL fy  
  Pavir.3NG302500.1.p  81 IDDAgRLTRPDPWELG-------RL--WFITSKKFG-----SDEKTRGGFWKEKDNEFTAIRGdqW--QqpaqrrpvyIGFKRTLEFY-- 152
                          5555455666666663.......12..233332222.....2334778999988776665554330..24566677789*********.. PP

                  NAM 112 rapkgektdWvmheyrl 128
                            ++g+kt+W+m+e+++
  Pavir.3NG302500.1.p 153 -MNDGTKTEWLMNEFAM 168
                          .68899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.71745191IPR003441NAC domain
PfamPF023655.8E-956167IPR003441NAC domain
SuperFamilySSF1019415.75E-1383191IPR003441NAC domain
PROSITE profilePS5080810.261271343IPR003656Zinc finger, BED-type
SMARTSM006143.5E-4271335IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDEAANVVGG GAFLDFPISS PWLDDLLDDD GDDDAPYSGG GVDSLLEAID LSAATDKDVI  60
GFVRANYERC KERNLCPPAP IDDAGRLTRP DPWELGRLWF ITSKKFGSDE KTRGGFWKEK  120
DNEFTAIRGD QWQQPAQRRP VYIGFKRTLE FYMNDGTKTE WLMNEFAMIH QSDDGHFFLK  180
EEVVISEVFK KDRDANLRPP MHPQDRPREM ANGNDQGDQG DREDEPNMDN LASHGDDHPP  240
RHGGAAQGDL QAPMGKRMRP DDDTMASSIR ISESEVWQQL TRIYVEVPKE VGSSKRKDSK  300
RLVYAVCHHC DRVFRASSKN GTSSLRRHAE GCQFRHSSQA RARGIVPQPG PSGGYAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG302500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806969.10.0uncharacterized protein LOC112885598
TrEMBLA0A2T7EIF90.0A0A2T7EIF9_9POAL; Uncharacterized protein
STRINGPavir.Cb00455.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-07NAC family protein