PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG304200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 395aa    MW: 41855 Da    PI: 4.2102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG304200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-1951100255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Pavir.3NG304200.1.p  51 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 100
                          789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512578132No hitNo description
CDDcd000184.24E-3050107No hitNo description
PfamPF008479.8E-1451100IPR001471AP2/ERF domain
SMARTSM003801.7E-3651114IPR001471AP2/ERF domain
PROSITE profilePS5103219.59951108IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1951108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-2751107IPR001471AP2/ERF domain
PRINTSPR003675.6E-85263IPR001471AP2/ERF domain
PRINTSPR003675.6E-87490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MARKRKASDS VDIEVGNDVL NSPPLLPSTG ACAWASVVAA AAQQQQRGRK RFVGVRQRPS  60
GRWVAEIKDT IQKIRVWLGT FDTAEEAARA YDEAACLLRG SNTRTNFWPR PSPAAAAAAL  120
PVQPPPPPAV ASSPAPALPP KVTNLLLLRL RARNQQLFSA TAAQQEAALL QSPLCEGTNG  180
GGDGEECAFQ VDDFLSYDCG SSDGTSSQEM EDEDEEEEEE ELDFQFMDQQ HAASPTAGCE  240
GGLCSPFDVV AAELDGAVEA DDGEPESAVQ ELMRRRMDYE RKISASLYAL SGVSECLRMR  300
HGGAAAAAGV RDQLTGLREA CRKKQRDEVQ QQHQEQAPSP EAAEDGNGKA AQDECSAGSG  360
APEATTSSSS SEASDGDGDS DVLLWSSLDL APIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG304200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671091e-110BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds.
GenBankJX4699201e-110JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809285.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A2T7EIJ50.0A0A2T7EIJ5_9POAL; Uncharacterized protein
STRINGPavir.Cb00448.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11