PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG307800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 349aa    MW: 39740.1 Da    PI: 7.9394
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG307800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-082042352253
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          ++yp  +++  LA+++gLt +q+++WF N R 
  Pavir.3NG307800.1.p 204 HPYPADSDKLLLARQTGLTRSQISNWFINARV 235
                          89***************************995 PP
2BELL1184.4e-3897167272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          + elq+k akL+ +l+eVd++Ykqy++q+q v+ssF++vag g+akpYt+lAl +iSrhFrcLkdai +qi
  Pavir.3NG307800.1.p  97 KLELQNKMAKLMAMLDEVDRKYKQYYHQMQSVVSSFDVVAGPGAAKPYTALALETISRHFRCLKDAINDQI 167
                          679******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-5420165IPR006563POX domain
PfamPF075264.4E-5126163IPR006563POX domain
SMARTSM003894.1E-4186244IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-22191244IPR009057Homeodomain-like
SuperFamilySSF466891.45E-13192241IPR009057Homeodomain-like
CDDcd000866.10E-8193234No hitNo description
PROSITE profilePS5007110.106194240IPR001356Homeobox domain
PfamPF059201.4E-17197235IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLSPHSYHDS LRADDIRMNS VQSEAIRNSR YLKAAQELLD EVVNVCKNIK QKAQKEQVEA  60
AKTYGKETEG GPKSEGVSSN PQESAANAAP ELSTAEKLEL QNKMAKLMAM LDEVDRKYKQ  120
YYHQMQSVVS SFDVVAGPGA AKPYTALALE TISRHFRCLK DAINDQINVI RKKLGEKENS  180
SSKEGKLTRG TIILRAWLYE HLLHPYPADS DKLLLARQTG LTRSQISNWF INARVHLWEP  240
IIEDIYKEEI GDIEQDSNSS SDIAPRRKGK MASSGQQGGP EKFYTSGLRE QPAERVESQH  300
RNYECWWRSC RIPEEEISYL TLVQLMIPFS ALKIYKHPCL ILWHFHQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-14190243962Homeobox protein Meis2
3k2a_B9e-14190243962Homeobox protein Meis2
4xrm_A9e-14190243962Homeobox protein Meis2
4xrm_B9e-14190243962Homeobox protein Meis2
4xrs_A7e-14190243558Homeobox protein Meis1
4xrs_B7e-14190243558Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270PRRKGKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG307800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443654.11e-164BEL1-like homeodomain protein 7
RefseqXP_021301592.11e-164BEL1-like homeodomain protein 7
SwissprotO656858e-84BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A1E5WAR51e-164A0A1E5WAR5_9POAL; BEL1-like homeodomain protein 6
STRINGPavir.J10000.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.23e-86BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]