PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 382aa    MW: 42761.7 Da    PI: 9.6458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11139226696
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          +++ +l++g +v+ k++ +++   ++e++t+tl ++ g r+ + +l  + + ++ y++++GW++ ++ n+L++gD + F+ +  se++ +
  Pavir.3NG309200.1.p 139 LNKTNLSNGYMVICKDYSDKYL--PHEDQTITLCHPPGsRKRDANL--KISADGaYIFSTGWRSLARGNELQDGDACAFEASM-SEGRVT 223
                          5788999***********9995..3456799999955559999999..4444444*************************543.788777 PP

                          EEE CS
                   B3  94 vkv 96 
                          v+v
  Pavir.3NG309200.1.p 224 VSV 226
                          766 PP
2B346.95e-15283362686
                          ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-S CS
                   B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldg 86 
                          +++    ++ l++ k+fa eh        +t++l+ +    sWe +l++r+ ++ + l++GWk+Fv++n L++gD ++F+ l g
  Pavir.3NG309200.1.p 283 VTAKKRGNDSLCFNKDFAMEHlPR---VRQTVRLRRPGVsCSWEAELQVRNEGKVHQLRRGWKQFVDDNALRQGDLCLFQpL-G 362
                          556666778899******9*9432...3359*****6655****************************************52.2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-15129226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16130224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-11133228No hitNo description
PROSITE profilePS5086310.419134230IPR003340B3 DNA binding domain
SMARTSM010193.1E-8135230IPR003340B3 DNA binding domain
PfamPF023621.4E-9139226IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293278381IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16280379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-15280379IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-9282381IPR003340B3 DNA binding domain
PfamPF023622.7E-12282364IPR003340B3 DNA binding domain
CDDcd100175.69E-13291379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLVFRYRGDS HFKVLIFDPS GCEKEFFRVV MNPSCGVRQR GIPHEQSPSG EGFARHRTGE  60
LSHSRKASKM TPADTPSQRS KMTCQEDTVN PMDSGVFQTF SESHTILAKG CILTNAQKAK  120
LGAFEKKIRH GIPLYVTNLN KTNLSNGYMV ICKDYSDKYL PHEDQTITLC HPPGSRKRDA  180
NLKISADGAY IFSTGWRSLA RGNELQDGDA CAFEASMSEG RVTVSVHPLH GSYSPPELGA  240
SPSLQLDMHP GYMVSRHTNL TPEQKKRVLE KLREIQAKTF VFVTAKKRGN DSLCFNKDFA  300
MEHLPRVRQT VRLRRPGVSC SWEAELQVRN EGKVHQLRRG WKQFVDDNAL RQGDLCLFQP  360
LGGGGEDDGK LAMNVHILRG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806972.11e-177B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2T7EIN70.0A0A2T7EIN7_9POAL; Uncharacterized protein
STRINGPavir.Cb00422.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-08B3 family protein