PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 318aa    MW: 36504.1 Da    PI: 6.2966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.7e-1847134197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk +     +++g +++p kf+++++ +   +k l l+  sg+ W + +  +k++++ +lt+GW++Fvka++Lke+D ++F+  g+s+f
  Pavir.3NG309600.2.p  47 FFKLM--TGDFARG-ISIPAKFVKNFNRQ--ITKGLDLKVASGEIWYFSV--EKRDDELLLTSGWEDFVKAHELKEKDLLIFTWRGNSSF 129
                          55655..4555666.9*******888766..44569999***********..*******************************9888888 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                             + +f
  Pavir.3NG309600.2.p 130 --EILIF 134
                          ..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-2240139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.42244137IPR003340B3 DNA binding domain
CDDcd100173.87E-1946134No hitNo description
Gene3DG3DSA:2.40.330.103.1E-2146139IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1547135IPR003340B3 DNA binding domain
SMARTSM010191.4E-1347137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDALDRRGGG EEWLADANQM VEKGCESCRE WQERCYWEHM DVTKIRFFKL MTGDFARGIS  60
IPAKFVKNFN RQITKGLDLK VASGEIWYFS VEKRDDELLL TSGWEDFVKA HELKEKDLLI  120
FTWRGNSSFE ILIFEANGCE KLSSLFANRI GPNLRKHLND TAGQHAEPYT LTDYEEASMA  180
LQLVGSTHMA SNSKKYHCKA KPRKEPQSPN SSSYHVKHEA IEEEESDDMY ANSKFYYSRM  240
ANQLTEEEKE NILSLASIQQ ENPAFVAVLK KSHRHAQEQL SRPSPVDLLL IIYRKEHKIS  300
YFVGQAERTS GLSDTIT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-160B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT26e-89Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIN91e-162A0A2T7EIN9_9POAL; Uncharacterized protein
STRINGPavir.J16679.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein