PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 299aa    MW: 34417.9 Da    PI: 6.7403
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-1828115197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk +     +++g +++p kf+++++ +   +k l l+  sg+ W + +  +k++++ +lt+GW++Fvka++Lke+D ++F+  g+s+f
  Pavir.3NG309600.3.p  28 FFKLM--TGDFARG-ISIPAKFVKNFNRQ--ITKGLDLKVASGEIWYFSV--EKRDDELLLTSGWEDFVKAHELKEKDLLIFTWRGNSSF 110
                          55655..4555666.9*******888766..44569999***********..*******************************9888888 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                             + +f
  Pavir.3NG309600.3.p 111 --EILIF 115
                          ..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-2221120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.42225118IPR003340B3 DNA binding domain
CDDcd100175.41E-1927115No hitNo description
Gene3DG3DSA:2.40.330.102.7E-2127120IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1528116IPR003340B3 DNA binding domain
SMARTSM010191.4E-1328118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVEKGCESCR EWQERCYWEH MDVTKIRFFK LMTGDFARGI SIPAKFVKNF NRQITKGLDL  60
KVASGEIWYF SVEKRDDELL LTSGWEDFVK AHELKEKDLL IFTWRGNSSF EILIFEANGC  120
EKLSSLFANR IGPNLRKHLN DTAGQHAEPY TLTDYEEASM ALQLVGSTHM ASNSKKYHCK  180
AKPRKEPQSP NSSSYHVKHE AIEEEESDDM YANSKFYYSR MANQLTEEEK ENILSLASIQ  240
QENPAFVAVL KKSHRHAQEQ LSRPSPVDLL LIIYRKEHKI SYFVGQAERT SGLSDTIT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-160B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT23e-89Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIN91e-162A0A2T7EIN9_9POAL; Uncharacterized protein
STRINGPavir.J16679.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein