PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 362aa    MW: 41334.9 Da    PI: 8.4782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.8e-1838125298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk + +   +++g  ++p kfa++++g+ +++    l+ +sg++W + +  +k++++ +l +GW++Fvka++L+e+D ++F+  g+s+f 
  Pavir.3NG309700.1.p  38 FKLM-T-GDFAKG-TSIPEKFAQNFKGQITGG--FELKAPSGKTWHISV--DKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 119
                          5555.3.334444.69******9998887787..7777***********..*******************************9999999. PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                            v vf+
  Pavir.3NG309700.1.p 120 -QVLVFE 125
                          .888776 PP
2B348.71.4e-15254352199
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                          f++vl++++v ++ + l++p +fa++h   +e+s +++l+ ++   +W +++ y+++  r++      +Fv++n+L+egD++vF+l++  
  Pavir.3NG309700.1.p 254 FVTVLKKKHVQRNnNSLIIPSRFAADHL--EERSHDIILRRPNRkDKWLIRYYYSGY-VRCFQNLAFFKFVRDNKLREGDICVFELMKGk 340
                          78889999998886889*********95..347789*****65549******66555.4677788899*****************99777 PP

                          SEE..EEEEE-S CS
                   B3  88 sefelvvkvfrk 99 
                          ++++++v+v+rk
  Pavir.3NG309700.1.p 341 MRATMTVHVIRK 352
                          *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-2230129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32434127IPR003340B3 DNA binding domain
CDDcd100171.08E-1636124No hitNo description
Gene3DG3DSA:2.40.330.104.1E-2136129IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-1137127IPR003340B3 DNA binding domain
PfamPF023622.1E-1537125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-20246352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-18247352IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-15252351No hitNo description
SMARTSM010191.1E-8254353IPR003340B3 DNA binding domain
PfamPF023621.3E-13254352IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053255353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQQEHGQASM VEKGCDSCRK WQEHYYWEHM DVSKIRFFKL MTGDFAKGTS IPEKFAQNFK  60
GQITGGFELK APSGKTWHIS VDKRGDELFL MSGWEDFVKA HELQENDLLL FTCCGNSSFQ  120
VLVFEASGCE RVSSMFGDRI CPDMCKHVKN IAGQHGKHCS VNDSEDTTIP SQLVRSPHNA  180
SSSKKLSGKT KPSEYEAPTT SNFMVKHSAN SDDSSDDEFA NSNCYYSMSA NRLRDEEKEE  240
IIGLASIQRN NPAFVTVLKK KHVQRNNNSL IIPSRFAADH LEERSHDIIL RRPNRKDKWL  300
IRYYYSGYVR CFQNLAFFKF VRDNKLREGD ICVFELMKGK MRATMTVHVI RKASGQFILV  360
G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.355320.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616591e-36AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808344.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-129Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP40.0A0A2T7EIP4_9POAL; Uncharacterized protein
STRINGPavir.Cb00511.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-30B3 family protein