PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 400aa    MW: 45697.5 Da    PI: 8.9124
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.1e-1841129299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk +     +++g +++p+kf+++ +++   +k l+l+ +sg++W +++   k+ ++ ++ +GW +F+kan+L+e+D ++F+++ + +f 
  Pavir.3NG309800.1.p  41 FKLM--TGDFAQG-ISIPRKFVSNLNEQ--ITKGLKLKAPSGKTWLIEV--AKNADELLFMSGWDNFAKANELQENDLLIFTRSVNCSF- 122
                          5555..4455555.9*******666555..5667***************..*******************************8877888. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                            v++f++
  Pavir.3NG309800.1.p 123 -DVQIFDA 129
                          .9999987 PP
2B340.25.9e-13263358499
                          E-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                   B3   4 vltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                          vl + +v+ + ++l++  +fa++h +g   ++  l l+ ++  +W v++ +  + +++     W +Fv++n+L+   +++F+l+++ + +
  Pavir.3NG309800.1.p 263 VLQKTHVGHRnNLLTIHHEFAANHlEGR--SHDILLLRPRRKDKWYVRYYHASHTRGFNCH-RWVKFVRDNRLQKDHICIFELMKStRMT 349
                          55555555553888*******9996433..333455666888*******666666665555.8*********************888999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++vv+v+rk
  Pavir.3NG309800.1.p 350 TMVVHVLRK 358
                          9****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-2035132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.64837130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-2139132IPR015300DNA-binding pseudobarrel domain
CDDcd100174.65E-1739128No hitNo description
SMARTSM010192.2E-1240130IPR003340B3 DNA binding domain
PfamPF023625.1E-1540129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-17252357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-16253357IPR015300DNA-binding pseudobarrel domain
CDDcd100176.94E-13258357No hitNo description
SMARTSM010194.5E-8260359IPR003340B3 DNA binding domain
PfamPF023624.9E-11260358IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109261359IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MPSASRECRM SKMIHQGCES CRKWQEHYYL EHMGASKVRF FKLMTGDFAQ GISIPRKFVS  60
NLNEQITKGL KLKAPSGKTW LIEVAKNADE LLFMSGWDNF AKANELQEND LLIFTRSVNC  120
SFDVQIFDAS GCEKVPCFFT SKKGPCMHKH FDGIVDQHVE HCTLSDSDDL RMPLRLIGSP  180
HKASTSKKMS GKTKPRKEPE SPGSGSYHIK PEPISDEERS DDRLFESNYY YYSRSAGNLT  240
GDERDQIFSL ASIQPGNPAF VAVLQKTHVG HRNNLLTIHH EFAANHLEGR SHDILLLRPR  300
RKDKWYVRYY HASHTRGFNC HRWVKFVRDN RLQKDHICIF ELMKSTRMTT MVVHVLRKVD  360
GKVCDGGLSS CTLVCYVVSC VVLCCILCTY VPLKNFNSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301RPRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.355326e-33callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616595e-39AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-141Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HFH20.0A0A2S3HFH2_9POAL; Uncharacterized protein
STRINGPavir.Cb00316.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-26B3 family protein