PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG326300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

CPP

Protein Properties

Length: 168aa MW: 17029.3 Da PI: 7.8674

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG326300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.3	4.2e-15	91	128	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC Cfa+g++C+e+C Ce C Nk Pavir.3NG326300.1.p 91 CKTCSCKKSKCLKLYCVCFASGSHCTESCGCEPCLNKP 128 89**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	8.8E-10	89	130	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	13.052	90	167	IPR005172	CRC domain
Pfam	PF03638	5.2E-11	92	127	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MDVEEGAPKP PQHEPAGSEP DDARNTPPPP APLPPPPAAA PGPAPVPAPA SEAAAAAPAS 60 AAVSPPPPPP AEANGTSDRK KKRKAEDGEG CKTCSCKKSK CLKLYCVCFA SGSHCTESCG 120 CEPCLNKPMQ GAPRTAPVLP FKPVQTLEAG GWTRVSGTTY KVSYGSY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.12044	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG326300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054046	1e-74	BT054046.1 Zea mays full-length cDNA clone ZM_BFc0149M24 mRNA, complete cds.
GenBank	EU967670	1e-74	EU967670.1 Zea mays clone 305228 tesmin/TSO1-like CXC domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809474.1	8e-58	RNA-binding protein MEX3A-like
TrEMBL	A0A2S3HFB2	2e-56	A0A2S3HFB2_9POAL; Uncharacterized protein
STRING	Pavir.Cb00245.1.p	1e-100	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9610	28	34

Link Out ? help Back to Top
Phytozome	Pavir.3NG326300.1.p