PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG005800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 181aa MW: 19616.4 Da PI: 5.6219

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG005800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.4	2.2e-12	62	147	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 f +v+++s+v k+ +lv+p + ++ + +l +grsW ++ + k ++ + t+ W++F+ +n L++gD +vF+l+ g+ Pavir.4KG005800.1.p 62 FTTVMSKSHVQKQFQLVIPARLHRHLpaA-----RVPAVL-LCRGRSWAASYCGDLKCKK-IDTAAWRDFALDNALRVGDACVFELIaGT 144 8899***************98555432.....223444.458****87777666.5688******************99444 PP SEE CS B3 88 sef 90 s + Pavir.4KG005800.1.p 145 SAG 147 443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.4E-17	55	158	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.35E-14	57	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.95E-16	60	158	No hit	No description
Pfam	PF02362	1.0E-10	62	146	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.251	62	160	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-4	62	160	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
METPGFPWRQ QQLDPDGCTK LEPHAGGIKP KGEPCEEQEP PPPAAAPDDW EVTPLSGEHP 60 FFTTVMSKSH VQKQFQLVIP ARLHRHLPAA RVPAVLLCRG RSWAASYCGD LKCKKIDTAA 120 WRDFALDNAL RVGDACVFEL IAGTSAGSEV VFRVQVLRGG LPEEITSKGA TPDEPLVIVD 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG005800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	1e-102	B3 domain-containing protein Os06g0112300-like isoform X1
Swissprot	Q9LHY9	2e-43	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A2T8JF47	1e-100	A0A2T8JF47_9POAL; Uncharacterized protein
STRING	Pavir.Da02396.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-07	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.4KG005800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]