PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG008700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 214aa    MW: 23854.4 Da    PI: 9.2834
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG008700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.76e-2535139199
                          EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                          f+kv tpsdv+k++rlv+pk+ ae+h          g   ++++ l + d +g   W+++++y+ +s++yv+tkGW+++v++++L +gD+
  Pavir.4KG008700.1.p  35 FEKVVTPSDVGKLNRLVVPKHLAEKHlplplplplpG-A-AGGTVLCFHDARGeAAWRFRYSYWSSSQSYVMTKGWSRYVRDKRLAAGDT 122
                          99*****************************999853.3.47789*****888799********************************** PP

                          EEEEE-SSSEE..EEEEE-S CS
                   B3  80 vvFkldgrsefelvvkvfrk 99 
                          v F    r++++l++  +r+
  Pavir.4KG008700.1.p 123 VSFC---RDGARLYIDCRRR 139
                          ****...5667888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-3128138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-2630132IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-1633130No hitNo description
PfamPF023627.7E-2235139IPR003340B3 DNA binding domain
SMARTSM010191.3E-1635140IPR003340B3 DNA binding domain
PROSITE profilePS5086311.91435140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MALTLVLESG SSGPSDDGRR REAAGDCSRP RERMFEKVVT PSDVGKLNRL VVPKHLAEKH  60
LPLPLPLPLP GAAGGTVLCF HDARGEAAWR FRYSYWSSSQ SYVMTKGWSR YVRDKRLAAG  120
DTVSFCRDGA RLYIDCRRRR RPAAVVPVPV VPPQQQQASL QAVQQRLVVA PPPRSMKEEE  180
EEEARSGRCL RLFGVNLELE LEPEPLLLLD LQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-393213911117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG008700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813830.12e-67B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS553e-54Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A1E5VK672e-68A0A1E5VK67_9POAL; B3 domain-containing protein
STRINGPavir.Da02442.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-36B3 family protein