PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG015400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 252aa    MW: 26175 Da    PI: 5.6577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-1556106153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          + ++GVr++   grWv+e+r+p ++g   r +lg++  a+ Aa+a++aa+++l
  Pavir.4KG015400.1.p  56 PVFRGVRRRGAAGRWVCEVRVPGNRG--VRLWLGTYAAADAAARAHDAAMLAL 106
                          579******************95554..**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1056106IPR001471AP2/ERF domain
PROSITE profilePS5103219.67857116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2357118IPR001471AP2/ERF domain
SMARTSM003809.7E-1457122IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1557118IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDMGRLEHST SSSSSTTSAS SSSSGQNKAS PPSSPSPPAP KKRPAGRTKF RETRHPVFRG  60
VRRRGAAGRW VCEVRVPGNR GVRLWLGTYA AADAAARAHD AAMLALGRGG AGLNFPDSAW  120
RLAVPPPSAL PSLDDARRAA LEAVADFQRR SGANDSAAAV DEATSGMSAP PPVPDIPGSL  180
ATSLEHVPAK TDETAALDGA AFEPDWFGDM DLDTYYASLA EGLLMEPPPP PAAWEHGDFG  240
DGGADVALWS Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG015400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4504811e-114AF450481.1 Zea mays DREB-like protein (DREB1A) mRNA, complete cds.
GenBankAY9647181e-114AY964718.1 Zea mays cultivar Qi319 CBF3-like protein (CBF3) mRNA, complete cds.
GenBankAY9669021e-114AY966902.1 Zea mays CRT/DRE binding factor (CBF3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803652.11e-123dehydration-responsive element-binding protein 1H-like
SwissprotA2Z3882e-58DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0902e-58DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLA0A3L6QVE31e-128A0A3L6QVE3_PANMI; Dehydration-responsive element-binding protein 1H-like
STRINGSi030869m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.15e-20C-repeat-binding factor 4