PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG032300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 460aa    MW: 48309.6 Da    PI: 7.8503
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG032300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.5e-1491150155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  Pavir.4KG032300.1.p  91 SRFRGVSRHRWTGRFEAHLWDkATWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 150
                          789******************777754666447**********99*************98 PP
2AP252.11.7e-16193244155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Pavir.4KG032300.1.p 193 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 244
                          89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-1591159IPR016177DNA-binding domain
PfamPF008472.0E-1191150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1492159IPR001471AP2/ERF domain
PROSITE profilePS5103219.34892158IPR001471AP2/ERF domain
SMARTSM003801.2E-2392164IPR001471AP2/ERF domain
PRINTSPR003673.7E-593104IPR001471AP2/ERF domain
PfamPF008476.1E-12193244IPR001471AP2/ERF domain
CDDcd000183.49E-23193254No hitNo description
SuperFamilySSF541717.85E-18193254IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-18194253IPR001471AP2/ERF domain
PROSITE profilePS5103218.953194252IPR001471AP2/ERF domain
SMARTSM003802.7E-26194258IPR001471AP2/ERF domain
PRINTSPR003673.7E-5234254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
METYSLVKDE LHGRAGGGGG GGGGGGGGGQ GLYCGATPRA TPVAGGGGGG AAKSVKRRKR  60
EPSAAVAASN GKEEAGGDKS AGGSNAAKRS SRFRGVSRHR WTGRFEAHLW DKATWNPTQK  120
KKGKQVYLGA YNEEDAAARA YDLAALKYWG PSTYTNFPVA DYEKELKVMQ NVSKEEYLAS  180
IRRKSNGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI  240
EYRGINAVTN FDLSTYIRWL KPAAGDDVGV GTPTSGACRQ SMPPPPLCLQ AGGLLQHPHA  300
AAAAGMLQVD VDGLYRGHHH HLAQRGASFS GLDDVGSVFA GGPSPTACGR PSPSSSTTAL  360
SLLLRSSVFQ ELVARNAGAT AQQQSVPADD DGAAASDVVV DAKVEIEEPL GRPDAEGELG  420
HEMYGGAAGA AEDEAFACSM YDLDDSFACI EQSLWSCLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258KSVKRRK
2116124PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG032300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599894e-80EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813277.10.0ethylene-responsive transcription factor WRI1-like
TrEMBLA0A3L6RZH50.0A0A3L6RZH5_PANMI; Uncharacterized protein
STRINGPavir.J19507.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-84AP2 family protein